Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.32■□□□□ 0.68
MBD4O95243 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 AC087499.5-201ENST00000452760 1342 ntBASIC19.31■□□□□ 0.68
MBD4O95243 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC19.31■□□□□ 0.68
MBD4O95243 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 AC006449.5-201ENST00000610658 2098 ntBASIC19.31■□□□□ 0.68
MBD4O95243 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
MBD4O95243 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.31■□□□□ 0.68
MBD4O95243 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC19.31■□□□□ 0.68
MBD4O95243 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC19.31■□□□□ 0.68
MBD4O95243 AC009477.1-201ENST00000452936 217 ntBASIC19.31■□□□□ 0.68
MBD4O95243 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.31■□□□□ 0.68
MBD4O95243 MIR4745-201ENST00000577608 62 ntBASIC19.31■□□□□ 0.68
MBD4O95243 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.31■□□□□ 0.68
MBD4O95243 RAB34-223ENST00000636154 730 ntTSL 2 BASIC19.31■□□□□ 0.68
MBD4O95243 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.31■□□□□ 0.68
MBD4O95243 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MBD4O95243 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.31■□□□□ 0.68
MBD4O95243 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.31■□□□□ 0.68
MBD4O95243 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
MBD4O95243 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.3■□□□□ 0.68
MBD4O95243 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.3■□□□□ 0.68
MBD4O95243 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
MBD4O95243 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.3■□□□□ 0.68
MBD4O95243 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC19.3■□□□□ 0.68
MBD4O95243 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.3■□□□□ 0.68
MBD4O95243 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.3■□□□□ 0.68
MBD4O95243 AC022144.1-201ENST00000602255 1580 ntBASIC19.3■□□□□ 0.68
MBD4O95243 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.3■□□□□ 0.68
MBD4O95243 AL596087.1-201ENST00000400979 1969 ntBASIC19.3■□□□□ 0.68
MBD4O95243 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
MBD4O95243 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.3■□□□□ 0.68
MBD4O95243 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MBD4O95243 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 AL118508.1-201ENST00000613502 2345 ntBASIC19.29■□□□□ 0.68
MBD4O95243 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MBD4O95243 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.29■□□□□ 0.68
MBD4O95243 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
MBD4O95243 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.29■□□□□ 0.68
MBD4O95243 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
MBD4O95243 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC19.29■□□□□ 0.68
MBD4O95243 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 TSPY16P-201ENST00000449843 468 ntBASIC19.29■□□□□ 0.68
MBD4O95243 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC19.29■□□□□ 0.68
MBD4O95243 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 AC010336.2-201ENST00000564226 506 ntBASIC19.29■□□□□ 0.68
MBD4O95243 AC009407.1-201ENST00000568958 598 ntBASIC19.29■□□□□ 0.68
MBD4O95243 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
MBD4O95243 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MBD4O95243 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.29■□□□□ 0.68
MBD4O95243 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.29■□□□□ 0.68
MBD4O95243 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms