Protein–RNA interactions for Protein: Q9Y446

PKP3, Plakophilin-3, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3Q9Y446 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AL589702.1-201ENST00000641229 1509 ntBASIC16.36■□□□□ 0.21
PKP3Q9Y446 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AP000344.2-201ENST00000512987 629 ntBASIC16.36■□□□□ 0.21
PKP3Q9Y446 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AC022145.2-201ENST00000598203 171 ntBASIC16.36■□□□□ 0.21
PKP3Q9Y446 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 AL365330.1-201ENST00000607459 531 ntBASIC16.36■□□□□ 0.21
PKP3Q9Y446 AC105339.1-204ENST00000636249 355 ntBASIC16.36■□□□□ 0.21
PKP3Q9Y446 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.36■□□□□ 0.21
PKP3Q9Y446 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
PKP3Q9Y446 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 UXT-AS1-201ENST00000590504 1525 ntBASIC16.35■□□□□ 0.21
PKP3Q9Y446 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 AL596087.1-201ENST00000400979 1969 ntBASIC16.35■□□□□ 0.21
PKP3Q9Y446 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 DOC2GP-204ENST00000639052 2548 ntBASIC16.35■□□□□ 0.21
PKP3Q9Y446 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 MIR1233-2-201ENST00000408138 82 ntBASIC16.35■□□□□ 0.21
PKP3Q9Y446 MIR1233-1-201ENST00000408722 82 ntBASIC16.35■□□□□ 0.21
PKP3Q9Y446 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 AC098859.1-201ENST00000502915 1238 ntBASIC16.35■□□□□ 0.21
PKP3Q9Y446 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 SPTSSB-204ENST00000617024 1292 ntBASIC16.35■□□□□ 0.21
PKP3Q9Y446 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.35■□□□□ 0.21
PKP3Q9Y446 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PKP3Q9Y446 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms