Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 PCDHA1-201ENST00000378133 2726 ntBASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC21■□□□□ 0.95
TRIM35Q9UPQ4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 AL096865.1-201ENST00000606796 927 ntBASIC21■□□□□ 0.95
TRIM35Q9UPQ4 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 AL033527.5-202ENST00000641632 1098 ntBASIC21■□□□□ 0.95
TRIM35Q9UPQ4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 AL513523.2-202ENST00000427283 2040 ntBASIC21■□□□□ 0.95
TRIM35Q9UPQ4 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC21■□□□□ 0.95
TRIM35Q9UPQ4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM35Q9UPQ4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 REXO1L1P-202ENST00000608646 1974 ntBASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 BASP1P1-201ENST00000430708 665 ntBASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms