Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 MIR648-201ENST00000385046 94 ntBASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 MIR1233-2-201ENST00000408138 82 ntBASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 MIR1233-1-201ENST00000408722 82 ntBASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 AC004967.1-201ENST00000453589 447 ntBASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC4Q9NTJ3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 AC008894.3-201ENST00000624324 3103 ntBASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 KRT18P32-201ENST00000424695 1287 ntBASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 AP006288.1-201ENST00000446065 395 ntBASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 RNA5SP410-201ENST00000516285 106 ntBASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 AC061975.2-201ENST00000581722 295 ntBASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 AC004835.2-201ENST00000603762 682 ntBASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC4Q9NTJ3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 FAM220BP-201ENST00000377689 816 ntBASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMC4Q9NTJ3 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms