Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 RPL13AP25-201ENST00000484130 612 ntBASIC15.78■□□□□ 0.12
VPS13AQ96RL7 AC025279.2-201ENST00000569730 653 ntBASIC15.78■□□□□ 0.12
VPS13AQ96RL7 MIR4750-201ENST00000584564 56 ntBASIC15.78■□□□□ 0.12
VPS13AQ96RL7 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 AL136301.1-201ENST00000615830 422 ntBASIC15.78■□□□□ 0.12
VPS13AQ96RL7 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 U82695.1-201ENST00000635752 1889 ntBASIC15.78■□□□□ 0.12
VPS13AQ96RL7 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 HYMAI-201ENST00000635591 3347 ntBASIC15.78■□□□□ 0.12
VPS13AQ96RL7 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 AC006480.2-201ENST00000609770 1337 ntBASIC15.78■□□□□ 0.12
VPS13AQ96RL7 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13AQ96RL7 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.77■□□□□ 0.12
VPS13AQ96RL7 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 AC006001.1-201ENST00000325130 474 ntBASIC15.77■□□□□ 0.12
VPS13AQ96RL7 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 AC104596.2-201ENST00000512793 793 ntBASIC15.77■□□□□ 0.12
VPS13AQ96RL7 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13AQ96RL7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 AC134915.1-201ENST00000426461 574 ntBASIC15.77■□□□□ 0.11
VPS13AQ96RL7 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS13AQ96RL7 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 AC134312.5-201ENST00000568031 1313 ntBASIC15.76■□□□□ 0.11
VPS13AQ96RL7 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 TOMM22P5-201ENST00000416399 439 ntBASIC15.76■□□□□ 0.11
VPS13AQ96RL7 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 AL645939.5-201ENST00000606834 243 ntBASIC15.76■□□□□ 0.11
VPS13AQ96RL7 AP000346.4-201ENST00000614827 381 ntBASIC15.76■□□□□ 0.11
VPS13AQ96RL7 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms