Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AC079140.1-201ENST00000508039 487 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 AC105233.2-201ENST00000523697 349 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 AF228730.5-201ENST00000530288 346 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 SPDYE9P-201ENST00000570642 692 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 SPDYE10P-202ENST00000612005 668 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 SPDYE8P-202ENST00000612377 668 ntBASIC19.15■□□□□ 0.66
BRF1Q92994 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.15■□□□□ 0.66
BRF1Q92994 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.15■□□□□ 0.66
BRF1Q92994 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.15■□□□□ 0.66
BRF1Q92994 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
BRF1Q92994 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BRF1Q92994 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
BRF1Q92994 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
BRF1Q92994 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
BRF1Q92994 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
BRF1Q92994 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
BRF1Q92994 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.14■□□□□ 0.65
BRF1Q92994 TIMM8BP1-201ENST00000452384 211 ntBASIC19.14■□□□□ 0.65
BRF1Q92994 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.14■□□□□ 0.65
BRF1Q92994 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.14■□□□□ 0.65
BRF1Q92994 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.14■□□□□ 0.65
BRF1Q92994 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.14■□□□□ 0.65
BRF1Q92994 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
BRF1Q92994 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
BRF1Q92994 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.14■□□□□ 0.65
BRF1Q92994 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.14■□□□□ 0.65
BRF1Q92994 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
BRF1Q92994 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.14■□□□□ 0.65
BRF1Q92994 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
BRF1Q92994 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
BRF1Q92994 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.14■□□□□ 0.65
BRF1Q92994 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.14■□□□□ 0.65
BRF1Q92994 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRF1Q92994 AC008677.1-201ENST00000519230 1561 ntBASIC19.14■□□□□ 0.65
BRF1Q92994 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.13■□□□□ 0.65
BRF1Q92994 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
BRF1Q92994 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
BRF1Q92994 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
BRF1Q92994 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.13■□□□□ 0.65
BRF1Q92994 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.13■□□□□ 0.65
BRF1Q92994 AC142381.1-201ENST00000426099 345 ntBASIC19.13■□□□□ 0.65
BRF1Q92994 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.13■□□□□ 0.65
BRF1Q92994 ACTG1P14-201ENST00000446382 1122 ntBASIC19.13■□□□□ 0.65
BRF1Q92994 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
BRF1Q92994 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.13■□□□□ 0.65
BRF1Q92994 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.13■□□□□ 0.65
BRF1Q92994 LINC01225-203ENST00000563550 1244 ntBASIC19.13■□□□□ 0.65
BRF1Q92994 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.13■□□□□ 0.65
BRF1Q92994 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 AL365330.1-201ENST00000607459 531 ntBASIC19.13■□□□□ 0.65
BRF1Q92994 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.13■□□□□ 0.65
BRF1Q92994 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.13■□□□□ 0.65
BRF1Q92994 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.13■□□□□ 0.65
BRF1Q92994 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.13■□□□□ 0.65
BRF1Q92994 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.13■□□□□ 0.65
BRF1Q92994 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BRF1Q92994 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.13■□□□□ 0.65
BRF1Q92994 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms