Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 AC069224.1-201ENST00000566372 1715 ntBASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.54■□□□□ 0.24
SHROOM3Q8TF72 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHROOM3Q8TF72 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 AC012645.4-201ENST00000610691 1061 ntBASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHROOM3Q8TF72 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHROOM3Q8TF72 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHROOM3Q8TF72 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHROOM3Q8TF72 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.52■□□□□ 0.23
SHROOM3Q8TF72 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHROOM3Q8TF72 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SHROOM3Q8TF72 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHROOM3Q8TF72 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SHROOM3Q8TF72 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 KRT8P23-201ENST00000560090 1207 ntBASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms