Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AC105020.1-201ENST00000435356 2205 ntBASIC13.32□□□□□ -0.28
VPS13CQ709C8 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 AC091046.1-201ENST00000331871 207 ntBASIC13.31□□□□□ -0.28
VPS13CQ709C8 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 AL627389.1-201ENST00000413508 1182 ntBASIC13.31□□□□□ -0.28
VPS13CQ709C8 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 BRI3BPP1-201ENST00000594224 787 ntBASIC13.31□□□□□ -0.28
VPS13CQ709C8 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.31□□□□□ -0.28
VPS13CQ709C8 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
VPS13CQ709C8 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 BTBD6P1-201ENST00000412176 1267 ntBASIC13.3□□□□□ -0.28
VPS13CQ709C8 ACTG1P3-201ENST00000431775 1114 ntBASIC13.3□□□□□ -0.28
VPS13CQ709C8 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 TMEM198B-204ENST00000484016 896 ntBASIC13.3□□□□□ -0.28
VPS13CQ709C8 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 AL049840.4-201ENST00000602422 811 ntBASIC13.3□□□□□ -0.28
VPS13CQ709C8 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 AC138028.6-201ENST00000616106 1482 ntBASIC13.3□□□□□ -0.28
VPS13CQ709C8 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 MIR3619-201ENST00000579667 83 ntBASIC13.3□□□□□ -0.28
VPS13CQ709C8 AC106872.11-201ENST00000605838 421 ntBASIC13.3□□□□□ -0.28
VPS13CQ709C8 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 AL607033.1-201ENST00000623900 1599 ntBASIC13.3□□□□□ -0.28
VPS13CQ709C8 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13CQ709C8 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
VPS13CQ709C8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 HNRNPUP1-201ENST00000554987 333 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 AC005915.1-201ENST00000624912 2018 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms