Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 DGCR5-201ENST00000399539 862 ntBASIC17.24■□□□□ 0.35
USP41Q3LFD5 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 SPDYE18-201ENST00000510091 1050 ntBASIC17.24■□□□□ 0.35
USP41Q3LFD5 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 SRD5A3P1-201ENST00000603021 949 ntBASIC17.24■□□□□ 0.35
USP41Q3LFD5 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.24■□□□□ 0.35
USP41Q3LFD5 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
USP41Q3LFD5 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP41Q3LFD5 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 AC004790.1-201ENST00000612686 536 ntBASIC17.23■□□□□ 0.35
USP41Q3LFD5 AC004461.2-201ENST00000629517 803 ntBASIC17.23■□□□□ 0.35
USP41Q3LFD5 AL109936.8-201ENST00000641772 604 ntBASIC17.23■□□□□ 0.35
USP41Q3LFD5 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 SLC7A15P-201ENST00000424028 1363 ntBASIC17.23■□□□□ 0.35
USP41Q3LFD5 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
USP41Q3LFD5 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP41Q3LFD5 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 AP006294.1-201ENST00000415407 339 ntBASIC17.22■□□□□ 0.35
USP41Q3LFD5 MEP1AP4-201ENST00000423244 1087 ntBASIC17.22■□□□□ 0.35
USP41Q3LFD5 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms