Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 BRWD1P1-201ENST00000401091 371 ntBASIC16.03■□□□□ 0.16
LIMK1P53667 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.03■□□□□ 0.16
LIMK1P53667 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.03■□□□□ 0.16
LIMK1P53667 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.03■□□□□ 0.16
LIMK1P53667 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.03■□□□□ 0.16
LIMK1P53667 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.03■□□□□ 0.16
LIMK1P53667 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.03■□□□□ 0.16
LIMK1P53667 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.03■□□□□ 0.16
LIMK1P53667 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LIMK1P53667 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
LIMK1P53667 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.03■□□□□ 0.16
LIMK1P53667 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
LIMK1P53667 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LIMK1P53667 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.03■□□□□ 0.16
LIMK1P53667 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LIMK1P53667 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.03■□□□□ 0.16
LIMK1P53667 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIMK1P53667 AC073439.1-201ENST00000624121 1774 ntBASIC16.03■□□□□ 0.16
LIMK1P53667 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.02■□□□□ 0.16
LIMK1P53667 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.02■□□□□ 0.16
LIMK1P53667 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.02■□□□□ 0.16
LIMK1P53667 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.02■□□□□ 0.16
LIMK1P53667 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.02■□□□□ 0.16
LIMK1P53667 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.02■□□□□ 0.16
LIMK1P53667 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.02■□□□□ 0.16
LIMK1P53667 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
LIMK1P53667 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.02■□□□□ 0.16
LIMK1P53667 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 AC098850.1-201ENST00000419919 790 ntBASIC16.02■□□□□ 0.16
LIMK1P53667 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.02■□□□□ 0.16
LIMK1P53667 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.02■□□□□ 0.16
LIMK1P53667 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.02■□□□□ 0.16
LIMK1P53667 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.02■□□□□ 0.16
LIMK1P53667 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.02■□□□□ 0.16
LIMK1P53667 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC16.02■□□□□ 0.16
LIMK1P53667 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.02■□□□□ 0.16
LIMK1P53667 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LIMK1P53667 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.02■□□□□ 0.15
LIMK1P53667 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LIMK1P53667 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.02■□□□□ 0.15
LIMK1P53667 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LIMK1P53667 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LIMK1P53667 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
LIMK1P53667 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LIMK1P53667 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LIMK1P53667 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.02■□□□□ 0.15
LIMK1P53667 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 KRT8P12-202ENST00000472924 1397 ntBASIC16.01■□□□□ 0.15
LIMK1P53667 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
LIMK1P53667 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.01■□□□□ 0.15
LIMK1P53667 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
LIMK1P53667 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
LIMK1P53667 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.01■□□□□ 0.15
LIMK1P53667 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.01■□□□□ 0.15
LIMK1P53667 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.01■□□□□ 0.15
LIMK1P53667 USP32P1-208ENST00000506594 1164 ntBASIC16.01■□□□□ 0.15
LIMK1P53667 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.01■□□□□ 0.15
LIMK1P53667 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.01■□□□□ 0.15
LIMK1P53667 AC233724.13-201ENST00000598383 410 ntBASIC16.01■□□□□ 0.15
LIMK1P53667 MIR8072-201ENST00000614241 80 ntBASIC16.01■□□□□ 0.15
LIMK1P53667 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.01■□□□□ 0.15
LIMK1P53667 AL139099.5-201ENST00000635274 300 ntBASIC16.01■□□□□ 0.15
LIMK1P53667 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
LIMK1P53667 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LIMK1P53667 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms