Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A4P53420 AC007969.1-201ENST00000433675 447 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 BCRP2-202ENST00000447763 634 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A4P53420 RN7SL399P-201ENST00000471648 279 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A4P53420 BCRP6-201ENST00000510112 632 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 BCRP7-201ENST00000511549 544 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A4P53420 PTP4A1P2-201ENST00000546033 454 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A4P53420 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL4A4P53420 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A4P53420 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A4P53420 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL4A4P53420 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A4P53420 LINC01144-201ENST00000626198 1710 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A4P53420 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A4P53420 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A4P53420 SOCS2P1-201ENST00000417727 557 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A4P53420 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.1■□□□□ 0.33
COL4A4P53420 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A4P53420 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A4P53420 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.1■□□□□ 0.33
COL4A4P53420 AC133539.2-201ENST00000604757 467 ntBASIC17.1■□□□□ 0.33
COL4A4P53420 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A4P53420 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A4P53420 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL4A4P53420 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.09■□□□□ 0.33
COL4A4P53420 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.09■□□□□ 0.33
COL4A4P53420 YBX1P6-201ENST00000442962 1002 ntBASIC17.09■□□□□ 0.33
COL4A4P53420 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.09■□□□□ 0.33
COL4A4P53420 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC17.09■□□□□ 0.33
COL4A4P53420 AL365330.1-201ENST00000607459 531 ntBASIC17.09■□□□□ 0.33
COL4A4P53420 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL4A4P53420 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.09■□□□□ 0.33
COL4A4P53420 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL4A4P53420 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.09■□□□□ 0.33
COL4A4P53420 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.09■□□□□ 0.33
COL4A4P53420 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL4A4P53420 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
COL4A4P53420 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.08■□□□□ 0.32
COL4A4P53420 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 MIR663B-201ENST00000408361 115 ntBASIC17.08■□□□□ 0.32
COL4A4P53420 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.08■□□□□ 0.32
COL4A4P53420 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
COL4A4P53420 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.08■□□□□ 0.32
COL4A4P53420 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL4A4P53420 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.08■□□□□ 0.32
COL4A4P53420 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.08■□□□□ 0.32
COL4A4P53420 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.08■□□□□ 0.32
COL4A4P53420 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.08■□□□□ 0.32
COL4A4P53420 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.08■□□□□ 0.32
COL4A4P53420 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
COL4A4P53420 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.08■□□□□ 0.32
COL4A4P53420 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.08■□□□□ 0.32
COL4A4P53420 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms