Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HMGA1P17096 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HMGA1P17096 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 GK-202ENST00000378941 458 ntTSL 3 BASIC16.73■□□□□ 0.27
HMGA1P17096 AC074338.1-201ENST00000416825 156 ntBASIC16.73■□□□□ 0.27
HMGA1P17096 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGA1P17096 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.73■□□□□ 0.27
HMGA1P17096 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
HMGA1P17096 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGA1P17096 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.73■□□□□ 0.27
HMGA1P17096 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HMGA1P17096 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
HMGA1P17096 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
HMGA1P17096 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGA1P17096 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGA1P17096 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HMGA1P17096 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 NKILA-202ENST00000614771 2598 ntBASIC16.73■□□□□ 0.27
HMGA1P17096 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGA1P17096 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGA1P17096 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGA1P17096 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGA1P17096 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HMGA1P17096 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGA1P17096 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HMGA1P17096 RPL13P2-201ENST00000440687 659 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGA1P17096 MYCLP2-201ENST00000449268 967 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 ELK1P1-201ENST00000485699 580 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGA1P17096 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGA1P17096 TIMM17BP1-201ENST00000545713 516 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGA1P17096 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HMGA1P17096 AC123567.1-201ENST00000548294 1261 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HMGA1P17096 CTBP2P3-201ENST00000585629 1255 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 AL391069.4-201ENST00000609583 481 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 IGHV3-72-202ENST00000621503 303 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGA1P17096 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGA1P17096 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGA1P17096 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 AP001282.1-201ENST00000531301 1499 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 AC090340.1-201ENST00000620778 4980 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
HMGA1P17096 PCDHA12-202ENST00000613593 2588 ntBASIC16.72■□□□□ 0.27
HMGA1P17096 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGA1P17096 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGA1P17096 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 AC134407.2-201ENST00000625089 1978 ntBASIC16.71■□□□□ 0.27
HMGA1P17096 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HMGA1P17096 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
HMGA1P17096 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
HMGA1P17096 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 HAUS4P1-201ENST00000406739 1145 ntBASIC16.71■□□□□ 0.27
HMGA1P17096 AP006294.1-201ENST00000415407 339 ntBASIC16.71■□□□□ 0.27
HMGA1P17096 TARDBPP1-201ENST00000442013 1203 ntBASIC16.71■□□□□ 0.27
HMGA1P17096 INE1-201ENST00000456273 945 ntBASIC16.71■□□□□ 0.27
HMGA1P17096 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGA1P17096 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGA1P17096 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGA1P17096 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGA1P17096 RARRES2P5-201ENST00000564013 466 ntBASIC16.71■□□□□ 0.27
HMGA1P17096 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGA1P17096 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGA1P17096 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms