Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC21.19■□□□□ 0.98
COL3A1P02461 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 MIR4313-201ENST00000580760 101 ntBASIC21.19■□□□□ 0.98
COL3A1P02461 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL3A1P02461 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL3A1P02461 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC21.18■□□□□ 0.98
COL3A1P02461 AL391005.1-201ENST00000623953 2435 ntBASIC21.18■□□□□ 0.98
COL3A1P02461 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL3A1P02461 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC21.18■□□□□ 0.98
COL3A1P02461 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL3A1P02461 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL3A1P02461 TOMM22P5-201ENST00000416399 439 ntBASIC21.18■□□□□ 0.98
COL3A1P02461 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL3A1P02461 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC21.18■□□□□ 0.98
COL3A1P02461 CD81-207ENST00000481687 890 ntTSL 2 BASIC21.18■□□□□ 0.98
COL3A1P02461 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC21.18■□□□□ 0.98
COL3A1P02461 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL3A1P02461 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC21.18■□□□□ 0.98
COL3A1P02461 RPSAP52-203ENST00000622976 1023 ntBASIC21.18■□□□□ 0.98
COL3A1P02461 AC026691.1-201ENST00000602502 2017 ntBASIC21.18■□□□□ 0.98
COL3A1P02461 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL3A1P02461 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL3A1P02461 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC21.18■□□□□ 0.98
COL3A1P02461 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL3A1P02461 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC21.18■□□□□ 0.98
COL3A1P02461 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL3A1P02461 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
COL3A1P02461 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL3A1P02461 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL3A1P02461 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL3A1P02461 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC21.17■□□□□ 0.98
COL3A1P02461 RN7SL692P-201ENST00000464677 288 ntBASIC21.17■□□□□ 0.98
COL3A1P02461 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC21.17■□□□□ 0.98
COL3A1P02461 AC005225.4-201ENST00000557330 545 ntBASIC21.17■□□□□ 0.98
COL3A1P02461 TP53TG3HP-202ENST00000569755 579 ntBASIC21.17■□□□□ 0.98
COL3A1P02461 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC21.17■□□□□ 0.98
COL3A1P02461 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL3A1P02461 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC21.17■□□□□ 0.98
COL3A1P02461 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC21.17■□□□□ 0.98
COL3A1P02461 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC21.16■□□□□ 0.98
COL3A1P02461 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL3A1P02461 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC21.16■□□□□ 0.98
COL3A1P02461 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC21.16■□□□□ 0.98
COL3A1P02461 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.16■□□□□ 0.98
COL3A1P02461 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC21.16■□□□□ 0.98
COL3A1P02461 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC21.16■□□□□ 0.98
COL3A1P02461 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC21.16■□□□□ 0.98
COL3A1P02461 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
COL3A1P02461 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL3A1P02461 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC21.15■□□□□ 0.98
COL3A1P02461 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.15■□□□□ 0.98
COL3A1P02461 AL391825.1-201ENST00000457671 1364 ntBASIC21.15■□□□□ 0.98
COL3A1P02461 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.15■□□□□ 0.98
COL3A1P02461 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC21.15■□□□□ 0.98
COL3A1P02461 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC21.15■□□□□ 0.98
COL3A1P02461 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC21.15■□□□□ 0.98
COL3A1P02461 USP40-206ENST00000443711 628 ntTSL 2 BASIC21.15■□□□□ 0.98
COL3A1P02461 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 MEIS3P1-201ENST00000495167 958 ntBASIC21.15■□□□□ 0.98
COL3A1P02461 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC21.15■□□□□ 0.98
COL3A1P02461 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
COL3A1P02461 RRP7BP-205ENST00000566851 833 ntBASIC21.15■□□□□ 0.98
COL3A1P02461 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC21.15■□□□□ 0.98
COL3A1P02461 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
COL3A1P02461 AC008494.3-201ENST00000606615 944 ntBASIC21.15■□□□□ 0.98
COL3A1P02461 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC21.15■□□□□ 0.98
COL3A1P02461 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
COL3A1P02461 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
COL3A1P02461 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 SUPT20HL2-201ENST00000486479 2409 ntBASIC21.15■□□□□ 0.98
COL3A1P02461 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL3A1P02461 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC21.15■□□□□ 0.98
COL3A1P02461 CLK3P2-201ENST00000427566 1453 ntBASIC21.15■□□□□ 0.98
COL3A1P02461 GRAP-202ENST00000395635 834 ntTSL 2 BASIC21.14■□□□□ 0.98
COL3A1P02461 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL3A1P02461 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
COL3A1P02461 ELK1P1-201ENST00000485699 580 ntBASIC21.14■□□□□ 0.98
COL3A1P02461 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms