Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
MSH4O15457 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
MSH4O15457 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.19■□□□□ 0.5
MSH4O15457 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
MSH4O15457 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 HAUS4P1-201ENST00000406739 1145 ntBASIC18.19■□□□□ 0.5
MSH4O15457 AC241585.1-201ENST00000433527 519 ntBASIC18.19■□□□□ 0.5
MSH4O15457 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.19■□□□□ 0.5
MSH4O15457 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.19■□□□□ 0.5
MSH4O15457 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 SPCS2P1-201ENST00000561636 679 ntBASIC18.19■□□□□ 0.5
MSH4O15457 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.19■□□□□ 0.5
MSH4O15457 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
MSH4O15457 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSH4O15457 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
MSH4O15457 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
MSH4O15457 KRT8P12-202ENST00000472924 1397 ntBASIC18.18■□□□□ 0.5
MSH4O15457 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
MSH4O15457 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 AC124067.4-201ENST00000519691 2379 ntBASIC18.18■□□□□ 0.5
MSH4O15457 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.18■□□□□ 0.5
MSH4O15457 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
MSH4O15457 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.18■□□□□ 0.5
MSH4O15457 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
MSH4O15457 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.18■□□□□ 0.5
MSH4O15457 BASP1P1-201ENST00000430708 665 ntBASIC18.18■□□□□ 0.5
MSH4O15457 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 AC004890.2-204ENST00000481968 304 ntBASIC18.18■□□□□ 0.5
MSH4O15457 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.18■□□□□ 0.5
MSH4O15457 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
MSH4O15457 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.18■□□□□ 0.5
MSH4O15457 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.18■□□□□ 0.5
MSH4O15457 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.18■□□□□ 0.5
MSH4O15457 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH4O15457 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH4O15457 BNIP3P1-202ENST00000550043 1585 ntBASIC18.17■□□□□ 0.5
MSH4O15457 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH4O15457 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH4O15457 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
MSH4O15457 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.17■□□□□ 0.5
MSH4O15457 MIR648-201ENST00000385046 94 ntBASIC18.17■□□□□ 0.5
MSH4O15457 AC004987.2-201ENST00000395959 1148 ntBASIC18.17■□□□□ 0.5
MSH4O15457 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH4O15457 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.17■□□□□ 0.5
MSH4O15457 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH4O15457 BCRP1-201ENST00000444246 691 ntBASIC18.17■□□□□ 0.5
MSH4O15457 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.17■□□□□ 0.5
MSH4O15457 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH4O15457 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH4O15457 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.17■□□□□ 0.5
MSH4O15457 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.17■□□□□ 0.5
MSH4O15457 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms