Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 AC133552.6-201ENST00000613406 534 ntBASIC20.55■□□□□ 0.88
SCN11AQ9UI33 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 MSTO2P-201ENST00000314835 1709 ntBASIC20.55■□□□□ 0.88
SCN11AQ9UI33 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN11AQ9UI33 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 AC099336.1-201ENST00000417053 1171 ntBASIC20.54■□□□□ 0.88
SCN11AQ9UI33 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 CTBP2P5-201ENST00000454986 1264 ntBASIC20.54■□□□□ 0.88
SCN11AQ9UI33 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 PTP4A1P2-201ENST00000546033 454 ntBASIC20.54■□□□□ 0.88
SCN11AQ9UI33 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 LBX2-201ENST00000341396 886 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 AL355994.2-201ENST00000447882 704 ntBASIC20.54■□□□□ 0.88
SCN11AQ9UI33 CSF2RBP1-201ENST00000447905 391 ntBASIC20.54■□□□□ 0.88
SCN11AQ9UI33 RPL13AP25-201ENST00000484130 612 ntBASIC20.54■□□□□ 0.88
SCN11AQ9UI33 EHF-205ENST00000527935 557 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN11AQ9UI33 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 CYP2AB1P-202ENST00000454440 1456 ntBASIC20.53■□□□□ 0.88
SCN11AQ9UI33 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.53■□□□□ 0.88
SCN11AQ9UI33 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 AL022328.1-201ENST00000610050 478 ntBASIC20.52■□□□□ 0.88
SCN11AQ9UI33 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms