Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 AL031284.1-201ENST00000419297 478 ntBASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 AL773604.1-201ENST00000617417 272 ntBASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 AC116407.3-201ENST00000623905 1129 ntBASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 AC002347.1-201ENST00000569543 541 ntBASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 MIR4321-201ENST00000592276 80 ntBASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 AC104692.2-201ENST00000603054 253 ntBASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMA1Q9UHB6 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 AC023157.3-201ENST00000619086 2088 ntBASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 RNA5SP419-201ENST00000515908 135 ntBASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 AL031008.1-201ENST00000619963 541 ntBASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMA1Q9UHB6 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.77■□□□□ 0.43
LIMA1Q9UHB6 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMA1Q9UHB6 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.77■□□□□ 0.43
LIMA1Q9UHB6 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMA1Q9UHB6 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMA1Q9UHB6 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.77■□□□□ 0.43
LIMA1Q9UHB6 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMA1Q9UHB6 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms