Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PTCHD1Q96NR3 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 POU5F1P6-201ENST00000466990 990 ntBASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 AC026150.2-201ENST00000564693 1156 ntBASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 AP001059.3-201ENST00000619053 235 ntBASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 AC006449.5-201ENST00000610658 2098 ntBASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 FOXO1B-201ENST00000504678 1527 ntBASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTCHD1Q96NR3 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 AP3S2-216ENST00000617003 1561 ntBASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 U82695.1-201ENST00000635752 1889 ntBASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PTCHD1Q96NR3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms