Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 AC243562.1-201ENST00000560672 389 ntBASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 AL603832.2-201ENST00000566195 2125 ntBASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC65Q8IXS2 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AC024909.3-201ENST00000611513 2257 ntBASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AC098859.1-201ENST00000502915 1238 ntBASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 KRT8P48-201ENST00000515599 1220 ntBASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AC005829.1-201ENST00000570002 483 ntBASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 SPTSSB-204ENST00000617024 1292 ntBASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC65Q8IXS2 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC65Q8IXS2 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 TIMM8BP1-201ENST00000452384 211 ntBASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 AC079140.1-201ENST00000508039 487 ntBASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.08■□□□□ 0.48
CCDC65Q8IXS2 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms