Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 MIR600HG-201ENST00000449175 5984 ntBASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 HNRNPDP1-201ENST00000439535 754 ntBASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 AC012640.2-201ENST00000561606 901 ntBASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 AL121912.1-201ENST00000603683 238 ntBASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 AC012569.1-201ENST00000591191 1524 ntBASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC50Q8IVM0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AC010491.1-201ENST00000563101 2797 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 RPS2P28-201ENST00000314255 741 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 KRT18P67-201ENST00000432816 1264 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AC018712.1-201ENST00000455767 687 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AC108073.2-201ENST00000464002 357 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AC020765.3-201ENST00000613051 740 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AC004790.2-201ENST00000623588 572 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 DBET-201ENST00000630918 3363 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC50Q8IVM0 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC50Q8IVM0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms