Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 FAM86LP-201ENST00000478302 853 ntBASIC11.14□□□□□ -0.63
CSMD3Q7Z407 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 AC060834.1-201ENST00000443027 2032 ntBASIC11.14□□□□□ -0.63
CSMD3Q7Z407 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 BANP-227ENST00000626016 2144 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 AKR7A2P1-201ENST00000460134 915 ntBASIC11.13□□□□□ -0.63
CSMD3Q7Z407 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 MIR5572-201ENST00000583188 137 ntBASIC11.13□□□□□ -0.63
CSMD3Q7Z407 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 AC092171.3-201ENST00000610122 2651 ntBASIC11.13□□□□□ -0.63
CSMD3Q7Z407 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 FADS2-212ENST00000522639 360 ntTSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 FADS2-215ENST00000574708 385 ntTSL 3 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 MIR33B-201ENST00000385104 96 ntBASIC11.13□□□□□ -0.63
CSMD3Q7Z407 MPV17-204ENST00000399052 749 ntTSL 4 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 BX284668.4-201ENST00000453917 508 ntBASIC11.13□□□□□ -0.63
CSMD3Q7Z407 RN7SL769P-201ENST00000469386 295 ntBASIC11.13□□□□□ -0.63
CSMD3Q7Z407 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CSMD3Q7Z407 AC018892.3-201ENST00000623986 2499 ntBASIC11.12□□□□□ -0.63
CSMD3Q7Z407 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 SPIB-207ENST00000597855 564 ntTSL 4 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 AC005252.2-201ENST00000624630 1141 ntBASIC11.12□□□□□ -0.63
CSMD3Q7Z407 AL139011.1-202ENST00000642063 584 ntBASIC11.12□□□□□ -0.63
CSMD3Q7Z407 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC11.12□□□□□ -0.63
CSMD3Q7Z407 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC11.12□□□□□ -0.63
CSMD3Q7Z407 CSH2-202ENST00000345366 598 ntTSL 5 BASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms