Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 RNA5SP421-201ENST00000516864 134 ntBASIC19.32■□□□□ 0.68
CTR9Q6PD62 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 NAA38-207ENST00000576861 556 ntTSL 3 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 GRAMD4P3-201ENST00000621665 1669 ntBASIC19.32■□□□□ 0.68
CTR9Q6PD62 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTR9Q6PD62 AC100757.3-201ENST00000622361 1406 ntBASIC19.32■□□□□ 0.68
CTR9Q6PD62 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTR9Q6PD62 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CTR9Q6PD62 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTR9Q6PD62 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CTR9Q6PD62 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CTR9Q6PD62 ANKRD26P3-201ENST00000454044 2748 ntBASIC19.31■□□□□ 0.68
CTR9Q6PD62 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 TSSK5P-201ENST00000423978 907 ntBASIC19.31■□□□□ 0.68
CTR9Q6PD62 FAM8A3P-201ENST00000427218 844 ntBASIC19.31■□□□□ 0.68
CTR9Q6PD62 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 UGT1A2P-201ENST00000454886 866 ntBASIC19.31■□□□□ 0.68
CTR9Q6PD62 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 MIR4321-201ENST00000592276 80 ntBASIC19.31■□□□□ 0.68
CTR9Q6PD62 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTR9Q6PD62 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.31■□□□□ 0.68
CTR9Q6PD62 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 PCDHA14-201ENST00000506751 2298 ntBASIC19.3■□□□□ 0.68
CTR9Q6PD62 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 AL365330.1-201ENST00000607459 531 ntBASIC19.3■□□□□ 0.68
CTR9Q6PD62 AL589739.1-201ENST00000607720 493 ntBASIC19.3■□□□□ 0.68
CTR9Q6PD62 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTR9Q6PD62 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.3■□□□□ 0.68
CTR9Q6PD62 FER1L4-210ENST00000615531 5998 ntBASIC19.29■□□□□ 0.68
CTR9Q6PD62 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTR9Q6PD62 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CTR9Q6PD62 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms