Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
MSH6P52701 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH6P52701 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
MSH6P52701 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH6P52701 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH6P52701 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSH6P52701 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH6P52701 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH6P52701 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH6P52701 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSH6P52701 BRF1-202ENST00000379932 884 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH6P52701 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
MSH6P52701 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
MSH6P52701 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH6P52701 FNTAP2-201ENST00000430308 634 ntBASIC22.23■■□□□ 1.15
MSH6P52701 TMEM198B-204ENST00000484016 896 ntBASIC22.23■■□□□ 1.15
MSH6P52701 AC022137.2-201ENST00000503482 481 ntBASIC22.23■■□□□ 1.15
MSH6P52701 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH6P52701 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH6P52701 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC22.23■■□□□ 1.15
MSH6P52701 GRN-214ENST00000589265 1632 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH6P52701 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC22.23■■□□□ 1.15
MSH6P52701 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC22.23■■□□□ 1.15
MSH6P52701 AL031731.1-201ENST00000642131 2094 ntBASIC22.23■■□□□ 1.15
MSH6P52701 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
MSH6P52701 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
MSH6P52701 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 TOMM22P5-201ENST00000416399 439 ntBASIC22.22■■□□□ 1.15
MSH6P52701 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 MTX1P1-201ENST00000440904 838 ntBASIC22.22■■□□□ 1.15
MSH6P52701 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC22.22■■□□□ 1.15
MSH6P52701 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH6P52701 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH6P52701 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH6P52701 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
MSH6P52701 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC22.22■■□□□ 1.15
MSH6P52701 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH6P52701 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH6P52701 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
MSH6P52701 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH6P52701 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC22.21■■□□□ 1.15
MSH6P52701 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC22.21■■□□□ 1.15
MSH6P52701 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
MSH6P52701 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 CHMP4BP1-201ENST00000556017 588 ntBASIC22.21■■□□□ 1.15
MSH6P52701 AC025279.2-201ENST00000569730 653 ntBASIC22.21■■□□□ 1.15
MSH6P52701 MIR4741-201ENST00000579822 90 ntBASIC22.21■■□□□ 1.15
MSH6P52701 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH6P52701 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
MSH6P52701 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 SPCS2P2-201ENST00000603270 608 ntBASIC22.21■■□□□ 1.15
MSH6P52701 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC22.21■■□□□ 1.15
MSH6P52701 AC138627.1-207ENST00000641560 1006 ntBASIC22.21■■□□□ 1.15
MSH6P52701 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC22.21■■□□□ 1.15
MSH6P52701 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
MSH6P52701 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH6P52701 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
MSH6P52701 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
MSH6P52701 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
MSH6P52701 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
MSH6P52701 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
MSH6P52701 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH6P52701 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH6P52701 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
MSH6P52701 TARDBPP1-201ENST00000442013 1203 ntBASIC22.2■■□□□ 1.14
MSH6P52701 ELP6-209ENST00000446787 894 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH6P52701 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH6P52701 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH6P52701 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms