Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
CTCFP49711 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.77■□□□□ 0.6
CTCFP49711 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 AL591846.1-201ENST00000451736 433 ntBASIC18.77■□□□□ 0.6
CTCFP49711 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CTCFP49711 ENPP7P5-201ENST00000541031 1031 ntBASIC18.77■□□□□ 0.6
CTCFP49711 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC18.77■□□□□ 0.6
CTCFP49711 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC18.77■□□□□ 0.6
CTCFP49711 KLK3-211ENST00000597483 810 ntTSL 2 BASIC18.77■□□□□ 0.6
CTCFP49711 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CTCFP49711 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.77■□□□□ 0.6
CTCFP49711 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTCFP49711 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
CTCFP49711 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.77■□□□□ 0.59
CTCFP49711 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.77■□□□□ 0.59
CTCFP49711 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CTCFP49711 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CTCFP49711 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CTCFP49711 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CTCFP49711 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CTCFP49711 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CTCFP49711 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC18.76■□□□□ 0.59
CTCFP49711 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CTCFP49711 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CTCFP49711 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC18.76■□□□□ 0.59
CTCFP49711 CSH2-202ENST00000345366 598 ntTSL 5 BASIC18.76■□□□□ 0.59
CTCFP49711 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CTCFP49711 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC18.76■□□□□ 0.59
CTCFP49711 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.76■□□□□ 0.59
CTCFP49711 AP006547.1-201ENST00000563435 692 ntBASIC18.76■□□□□ 0.59
CTCFP49711 AC036164.1-201ENST00000570544 333 ntBASIC18.76■□□□□ 0.59
CTCFP49711 AC091812.3-201ENST00000621362 345 ntBASIC18.76■□□□□ 0.59
CTCFP49711 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.76■□□□□ 0.59
CTCFP49711 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CTCFP49711 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.76■□□□□ 0.59
CTCFP49711 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTCFP49711 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.75■□□□□ 0.59
CTCFP49711 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.75■□□□□ 0.59
CTCFP49711 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.75■□□□□ 0.59
CTCFP49711 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
CTCFP49711 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.75■□□□□ 0.59
CTCFP49711 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC18.75■□□□□ 0.59
CTCFP49711 RN7SL720P-201ENST00000488178 304 ntBASIC18.75■□□□□ 0.59
CTCFP49711 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.75■□□□□ 0.59
CTCFP49711 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC18.75■□□□□ 0.59
CTCFP49711 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.75■□□□□ 0.59
CTCFP49711 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.75■□□□□ 0.59
CTCFP49711 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.75■□□□□ 0.59
CTCFP49711 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CTCFP49711 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CTCFP49711 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.75■□□□□ 0.59
CTCFP49711 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CTCFP49711 AC009053.2-201ENST00000563701 2365 ntBASIC18.75■□□□□ 0.59
CTCFP49711 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CTCFP49711 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms