Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 PRSS30P-206ENST00000641773 873 ntBASIC12.39□□□□□ -0.43
COL6A5A8TX70 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 DRD5P1-201ENST00000456605 1438 ntBASIC12.39□□□□□ -0.43
COL6A5A8TX70 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 AL138709.1-201ENST00000614840 1693 ntBASIC12.39□□□□□ -0.43
COL6A5A8TX70 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 AC078991.1-201ENST00000437297 610 ntBASIC12.39□□□□□ -0.43
COL6A5A8TX70 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 POU5F1P6-201ENST00000466990 990 ntBASIC12.39□□□□□ -0.43
COL6A5A8TX70 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL6A5A8TX70 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 KLK11-210ENST00000600362 759 ntTSL 3 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 AC025271.4-201ENST00000621477 1726 ntBASIC12.39□□□□□ -0.43
COL6A5A8TX70 LINC01451-201ENST00000623792 534 ntBASIC12.39□□□□□ -0.43
COL6A5A8TX70 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.39□□□□□ -0.43
COL6A5A8TX70 TPR-209ENST00000613151 2478 ntTSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 DDX39AP1-201ENST00000445147 1181 ntBASIC12.38□□□□□ -0.43
COL6A5A8TX70 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 RNA5SP486-201ENST00000515961 83 ntBASIC12.38□□□□□ -0.43
COL6A5A8TX70 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 AC006453.1-201ENST00000636037 1257 ntBASIC12.38□□□□□ -0.43
COL6A5A8TX70 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 EEF1DP4-201ENST00000446006 880 ntBASIC12.38□□□□□ -0.43
COL6A5A8TX70 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 AC005730.2-201ENST00000564549 1184 ntBASIC12.38□□□□□ -0.43
COL6A5A8TX70 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 AC127024.7-201ENST00000625101 200 ntBASIC12.38□□□□□ -0.43
COL6A5A8TX70 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.38□□□□□ -0.43
COL6A5A8TX70 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
COL6A5A8TX70 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms