Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 AC140113.2-201ENST00000604370 208 ntBASIC13.24□□□□□ -0.29
FOXA2Q9Y261 AC010507.1-201ENST00000633895 436 ntBASIC13.24□□□□□ -0.29
FOXA2Q9Y261 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AP005117.1-202ENST00000581724 1908 ntBASIC13.23□□□□□ -0.29
FOXA2Q9Y261 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AC112504.1-201ENST00000623415 1841 ntBASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 MIR940-201ENST00000401276 94 ntBASIC13.23□□□□□ -0.29
FOXA2Q9Y261 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 MMP17-203ENST00000535004 719 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 ACTL9-202ENST00000612068 1252 ntBASIC13.23□□□□□ -0.29
FOXA2Q9Y261 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AC007064.4-201ENST00000637740 555 ntBASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AL592424.1-201ENST00000563624 1536 ntBASIC13.23□□□□□ -0.29
FOXA2Q9Y261 AC012569.1-201ENST00000591191 1524 ntBASIC13.23□□□□□ -0.29
FOXA2Q9Y261 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA2Q9Y261 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AC069224.1-201ENST00000566372 1715 ntBASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms