Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 DBET-201ENST00000630918 3363 ntBASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 AC006058.4-201ENST00000624016 1670 ntBASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 AC136621.1-201ENST00000624017 2304 ntBASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 KRT18P34-201ENST00000488218 1270 ntBASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 AC096734.2-201ENST00000562054 433 ntBASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 AC010507.1-201ENST00000633895 436 ntBASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMA1Q9UHB6 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 CRYGEP-201ENST00000412192 528 ntBASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 AL589702.1-201ENST00000641229 1509 ntBASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 TMBIM7P-203ENST00000641617 1718 ntBASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 AC092850.2-201ENST00000623821 2697 ntBASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMA1Q9UHB6 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 AC073439.1-201ENST00000624121 1774 ntBASIC17.79■□□□□ 0.44
LIMA1Q9UHB6 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms