Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FAM207CP-201ENST00000443486 507 ntBASIC17.48■□□□□ 0.39
CNTN3Q9P232 TSPY16P-201ENST00000449843 468 ntBASIC17.48■□□□□ 0.39
CNTN3Q9P232 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.48■□□□□ 0.39
CNTN3Q9P232 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.48■□□□□ 0.39
CNTN3Q9P232 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CNTN3Q9P232 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CNTN3Q9P232 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CNTN3Q9P232 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CNTN3Q9P232 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CNTN3Q9P232 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CNTN3Q9P232 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CNTN3Q9P232 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.48■□□□□ 0.39
CNTN3Q9P232 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.48■□□□□ 0.39
CNTN3Q9P232 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.48■□□□□ 0.39
CNTN3Q9P232 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CNTN3Q9P232 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CNTN3Q9P232 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CNTN3Q9P232 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.47■□□□□ 0.39
CNTN3Q9P232 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 AL136982.4-201ENST00000437689 1740 ntBASIC17.47■□□□□ 0.39
CNTN3Q9P232 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 ZNF890P-202ENST00000530367 1156 ntBASIC17.47■□□□□ 0.39
CNTN3Q9P232 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 RN7SL204P-201ENST00000582831 262 ntBASIC17.47■□□□□ 0.39
CNTN3Q9P232 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 AC046158.3-201ENST00000624947 2558 ntBASIC17.47■□□□□ 0.39
CNTN3Q9P232 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CNTN3Q9P232 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CNTN3Q9P232 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 CYP4F24P-201ENST00000586049 1580 ntBASIC17.46■□□□□ 0.39
CNTN3Q9P232 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 AC002472.2-201ENST00000442739 958 ntBASIC17.46■□□□□ 0.39
CNTN3Q9P232 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 AC009407.1-201ENST00000568958 598 ntBASIC17.46■□□□□ 0.39
CNTN3Q9P232 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CNTN3Q9P232 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 AL139384.1-201ENST00000612143 3047 ntBASIC17.46■□□□□ 0.39
CNTN3Q9P232 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CNTN3Q9P232 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
CNTN3Q9P232 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.46■□□□□ 0.38
CNTN3Q9P232 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CNTN3Q9P232 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms