Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
BRF1Q92994 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.2■□□□□ 0.66
BRF1Q92994 FOXO1B-201ENST00000504678 1527 ntBASIC19.2■□□□□ 0.66
BRF1Q92994 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
BRF1Q92994 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.19■□□□□ 0.66
BRF1Q92994 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
BRF1Q92994 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
BRF1Q92994 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
BRF1Q92994 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
BRF1Q92994 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.19■□□□□ 0.66
BRF1Q92994 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC19.19■□□□□ 0.66
BRF1Q92994 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 AC243562.1-201ENST00000560672 389 ntBASIC19.19■□□□□ 0.66
BRF1Q92994 MTDHP5-201ENST00000598980 586 ntBASIC19.19■□□□□ 0.66
BRF1Q92994 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.19■□□□□ 0.66
BRF1Q92994 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.19■□□□□ 0.66
BRF1Q92994 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.19■□□□□ 0.66
BRF1Q92994 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
BRF1Q92994 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.19■□□□□ 0.66
BRF1Q92994 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.19■□□□□ 0.66
BRF1Q92994 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
BRF1Q92994 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
BRF1Q92994 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BRF1Q92994 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.18■□□□□ 0.66
BRF1Q92994 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.18■□□□□ 0.66
BRF1Q92994 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
BRF1Q92994 MIR648-201ENST00000385046 94 ntBASIC19.18■□□□□ 0.66
BRF1Q92994 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.18■□□□□ 0.66
BRF1Q92994 HTR5BP-201ENST00000430851 1154 ntBASIC19.18■□□□□ 0.66
BRF1Q92994 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.18■□□□□ 0.66
BRF1Q92994 KRT8P48-201ENST00000515599 1220 ntBASIC19.18■□□□□ 0.66
BRF1Q92994 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.18■□□□□ 0.66
BRF1Q92994 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.18■□□□□ 0.66
BRF1Q92994 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.18■□□□□ 0.66
BRF1Q92994 AC073389.1-201ENST00000595595 795 ntBASIC19.18■□□□□ 0.66
BRF1Q92994 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
BRF1Q92994 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
BRF1Q92994 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BRF1Q92994 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
BRF1Q92994 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.17■□□□□ 0.66
BRF1Q92994 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.17■□□□□ 0.66
BRF1Q92994 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.17■□□□□ 0.66
BRF1Q92994 AC069224.1-201ENST00000566372 1715 ntBASIC19.17■□□□□ 0.66
BRF1Q92994 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRF1Q92994 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms