Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 AL160237.2-201ENST00000556165 472 ntBASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 STK25P1-201ENST00000585406 838 ntBASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 TP73-AS1-207ENST00000624167 988 ntBASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PPP4R4Q6NUP7 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 FGFR3P6-201ENST00000457012 610 ntBASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 STK19B-204ENST00000512515 211 ntBASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 AC106795.1-205ENST00000512851 1056 ntBASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 AP002469.2-201ENST00000531724 424 ntBASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 DUX4L17-201ENST00000557360 1267 ntBASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 AC004817.3-201ENST00000602957 2129 ntBASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.72■□□□□ 0.11
PPP4R4Q6NUP7 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 AC006449.6-201ENST00000612330 2296 ntBASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PPP4R4Q6NUP7 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms