Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 SPDYE19P-201ENST00000338590 713 ntBASIC17.29■□□□□ 0.36
USP41Q3LFD5 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 AC114501.2-201ENST00000439631 535 ntBASIC17.29■□□□□ 0.36
USP41Q3LFD5 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 KRT17P7-201ENST00000451704 1104 ntBASIC17.29■□□□□ 0.36
USP41Q3LFD5 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.29■□□□□ 0.36
USP41Q3LFD5 U82695.1-201ENST00000635752 1889 ntBASIC17.29■□□□□ 0.36
USP41Q3LFD5 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP41Q3LFD5 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 AC093004.1-201ENST00000508850 424 ntBASIC17.28■□□□□ 0.36
USP41Q3LFD5 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 AL365330.1-201ENST00000607459 531 ntBASIC17.28■□□□□ 0.36
USP41Q3LFD5 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.28■□□□□ 0.36
USP41Q3LFD5 AC005915.1-201ENST00000624912 2018 ntBASIC17.28■□□□□ 0.36
USP41Q3LFD5 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP41Q3LFD5 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 AC105020.1-201ENST00000435356 2205 ntBASIC17.27■□□□□ 0.36
USP41Q3LFD5 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP41Q3LFD5 AC098614.1-201ENST00000368528 745 ntBASIC17.27■□□□□ 0.36
USP41Q3LFD5 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
USP41Q3LFD5 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms