Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 AC073389.1-201ENST00000595595 795 ntBASIC17.07■□□□□ 0.32
HDAC4P56524 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC4P56524 AC026120.1-201ENST00000611536 926 ntBASIC17.07■□□□□ 0.32
HDAC4P56524 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC4P56524 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC4P56524 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HDAC4P56524 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC4P56524 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 FOXO1B-201ENST00000504678 1527 ntBASIC17.06■□□□□ 0.32
HDAC4P56524 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 AL513523.2-202ENST00000427283 2040 ntBASIC17.06■□□□□ 0.32
HDAC4P56524 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.06■□□□□ 0.32
HDAC4P56524 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.06■□□□□ 0.32
HDAC4P56524 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 RN7SL589P-201ENST00000481268 310 ntBASIC17.06■□□□□ 0.32
HDAC4P56524 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.06■□□□□ 0.32
HDAC4P56524 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.06■□□□□ 0.32
HDAC4P56524 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
HDAC4P56524 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 AC010327.4-202ENST00000591484 748 ntBASIC17.06■□□□□ 0.32
HDAC4P56524 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
HDAC4P56524 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
HDAC4P56524 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
HDAC4P56524 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.06■□□□□ 0.32
HDAC4P56524 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 AL589702.1-201ENST00000641229 1509 ntBASIC17.06■□□□□ 0.32
HDAC4P56524 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HDAC4P56524 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 PCDHA1-201ENST00000378133 2726 ntBASIC17.05■□□□□ 0.32
HDAC4P56524 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
HDAC4P56524 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HDAC4P56524 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC4P56524 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HDAC4P56524 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.05■□□□□ 0.32
HDAC4P56524 RPSAP43-201ENST00000402237 625 ntBASIC17.05■□□□□ 0.32
HDAC4P56524 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC4P56524 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 SPCS2P4-201ENST00000436160 681 ntBASIC17.05■□□□□ 0.32
HDAC4P56524 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 AC112482.1-201ENST00000492080 688 ntBASIC17.05■□□□□ 0.32
HDAC4P56524 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms