Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A4P53420 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 RNA5SP423-201ENST00000517127 109 ntBASIC17.16■□□□□ 0.34
COL4A4P53420 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A4P53420 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
COL4A4P53420 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A4P53420 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A4P53420 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A4P53420 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A4P53420 MIR3615-201ENST00000581999 87 ntBASIC17.16■□□□□ 0.34
COL4A4P53420 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A4P53420 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.16■□□□□ 0.34
COL4A4P53420 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
COL4A4P53420 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 AZGP1P1-201ENST00000411909 902 ntBASIC17.15■□□□□ 0.34
COL4A4P53420 GPAA1P2-201ENST00000417923 928 ntBASIC17.15■□□□□ 0.34
COL4A4P53420 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.15■□□□□ 0.34
COL4A4P53420 AL355864.2-201ENST00000447420 863 ntBASIC17.15■□□□□ 0.34
COL4A4P53420 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A4P53420 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
COL4A4P53420 BTNL10-201ENST00000595971 695 ntBASIC17.15■□□□□ 0.34
COL4A4P53420 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A4P53420 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A4P53420 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A4P53420 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A4P53420 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A4P53420 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A4P53420 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
COL4A4P53420 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A4P53420 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A4P53420 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL4A4P53420 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.34
COL4A4P53420 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A4P53420 KRT8P22-201ENST00000562317 1415 ntBASIC17.14■□□□□ 0.33
COL4A4P53420 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A4P53420 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A4P53420 HIST3H2BA-201ENST00000436555 524 ntBASIC17.14■□□□□ 0.33
COL4A4P53420 AL139010.1-201ENST00000454878 894 ntBASIC17.14■□□□□ 0.33
COL4A4P53420 PFN1P12-201ENST00000455938 534 ntBASIC17.14■□□□□ 0.33
COL4A4P53420 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A4P53420 SLC25A47P1-201ENST00000531577 414 ntBASIC17.14■□□□□ 0.33
COL4A4P53420 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL4A4P53420 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A4P53420 RN7SL560P-201ENST00000577943 264 ntBASIC17.14■□□□□ 0.33
COL4A4P53420 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A4P53420 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A4P53420 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL4A4P53420 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A4P53420 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL4A4P53420 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A4P53420 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A4P53420 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A4P53420 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
COL4A4P53420 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A4P53420 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A4P53420 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A4P53420 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL4A4P53420 AL136982.4-201ENST00000437689 1740 ntBASIC17.14■□□□□ 0.33
COL4A4P53420 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A4P53420 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A4P53420 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL4A4P53420 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A4P53420 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A4P53420 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL4A4P53420 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A4P53420 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A4P53420 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.13■□□□□ 0.33
COL4A4P53420 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms