Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.7■□□□□ 0.1
SEMA3DO95025 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.7■□□□□ 0.1
SEMA3DO95025 AL592424.1-201ENST00000563624 1536 ntBASIC15.7■□□□□ 0.1
SEMA3DO95025 REXO1L8P-201ENST00000604378 1897 ntBASIC15.7■□□□□ 0.1
SEMA3DO95025 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 AL596087.1-201ENST00000400979 1969 ntBASIC15.7■□□□□ 0.1
SEMA3DO95025 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
SEMA3DO95025 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.7■□□□□ 0.1
SEMA3DO95025 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SEMA3DO95025 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
SEMA3DO95025 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.7■□□□□ 0.1
SEMA3DO95025 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SEMA3DO95025 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.7■□□□□ 0.1
SEMA3DO95025 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
SEMA3DO95025 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.7■□□□□ 0.1
SEMA3DO95025 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
SEMA3DO95025 AC005622.1-201ENST00000636801 1703 ntBASIC15.7■□□□□ 0.1
SEMA3DO95025 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
SEMA3DO95025 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SEMA3DO95025 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.7■□□□□ 0.1
SEMA3DO95025 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.7■□□□□ 0.1
SEMA3DO95025 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
SEMA3DO95025 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SEMA3DO95025 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.69■□□□□ 0.1
SEMA3DO95025 AC092919.2-201ENST00000623631 1645 ntBASIC15.69■□□□□ 0.1
SEMA3DO95025 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.69■□□□□ 0.1
SEMA3DO95025 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.69■□□□□ 0.1
SEMA3DO95025 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SEMA3DO95025 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
SEMA3DO95025 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 AC002056.1-201ENST00000395613 760 ntBASIC15.69■□□□□ 0.1
SEMA3DO95025 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SEMA3DO95025 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.69■□□□□ 0.1
SEMA3DO95025 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SEMA3DO95025 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SEMA3DO95025 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.69■□□□□ 0.1
SEMA3DO95025 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.69■□□□□ 0.1
SEMA3DO95025 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
SEMA3DO95025 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.69■□□□□ 0.1
SEMA3DO95025 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SEMA3DO95025 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SEMA3DO95025 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SEMA3DO95025 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
SEMA3DO95025 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.69■□□□□ 0.1
SEMA3DO95025 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.69■□□□□ 0.1
SEMA3DO95025 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SEMA3DO95025 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SEMA3DO95025 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 WASH6P-202ENST00000359512 1437 ntBASIC15.68■□□□□ 0.1
SEMA3DO95025 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.68■□□□□ 0.1
SEMA3DO95025 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.68■□□□□ 0.1
SEMA3DO95025 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SEMA3DO95025 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.68■□□□□ 0.1
SEMA3DO95025 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.68■□□□□ 0.1
SEMA3DO95025 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 AC132872.4-202ENST00000622924 2756 ntBASIC15.68■□□□□ 0.1
SEMA3DO95025 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.68■□□□□ 0.1
SEMA3DO95025 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 AC016027.1-202ENST00000607927 1699 ntBASIC15.68■□□□□ 0.1
SEMA3DO95025 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.68■□□□□ 0.1
SEMA3DO95025 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SEMA3DO95025 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SEMA3DO95025 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SEMA3DO95025 AC093724.1-201ENST00000448659 1027 ntBASIC15.68■□□□□ 0.1
SEMA3DO95025 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.68■□□□□ 0.1
SEMA3DO95025 AC112191.1-201ENST00000523689 701 ntBASIC15.68■□□□□ 0.1
SEMA3DO95025 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SEMA3DO95025 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms