Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AC055876.2-201ENST00000531834 546 ntBASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 TPRX2P-201ENST00000535362 881 ntBASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 CTBP2P3-201ENST00000585629 1255 ntBASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 SRD5A3P1-201ENST00000603021 949 ntBASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.01■□□□□ 0.31
LIMD1Q9UGP4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 SLC25A1P3-201ENST00000395415 828 ntBASIC17■□□□□ 0.31
LIMD1Q9UGP4 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 AC084346.2-201ENST00000607097 949 ntBASIC17■□□□□ 0.31
LIMD1Q9UGP4 AC099568.2-201ENST00000609194 695 ntBASIC17■□□□□ 0.31
LIMD1Q9UGP4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17■□□□□ 0.31
LIMD1Q9UGP4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LIMD1Q9UGP4 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 AC234783.1-201ENST00000441761 496 ntBASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 TNFRSF10A-AS1-201ENST00000518308 637 ntTSL 3 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.99■□□□□ 0.31
LIMD1Q9UGP4 MIR6775-201ENST00000617557 69 ntBASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms