Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 KRT18P27-201ENST00000427733 1299 ntBASIC17.68■□□□□ 0.42
CCDC42Q96M95 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 PGM5P2-202ENST00000637225 1043 ntBASIC17.68■□□□□ 0.42
CCDC42Q96M95 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.68■□□□□ 0.42
CCDC42Q96M95 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 AP003680.1-201ENST00000598970 3660 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 AC073621.1-201ENST00000392730 636 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 DUSP5P1-201ENST00000441325 1139 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 SAPCD2P3-201ENST00000455031 850 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 AC136632.2-201ENST00000512891 861 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 LINC01711-201ENST00000598340 967 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 AC008667.4-201ENST00000607370 168 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 U82695.1-201ENST00000635752 1889 ntBASIC17.67■□□□□ 0.42
CCDC42Q96M95 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC42Q96M95 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC42Q96M95 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 HCG4P8-203ENST00000443049 980 ntBASIC17.66■□□□□ 0.42
CCDC42Q96M95 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 AL445228.2-201ENST00000605589 952 ntBASIC17.66■□□□□ 0.42
CCDC42Q96M95 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms