Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PGR-209ENST00000617858 2816 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 CD99-202ENST00000381180 530 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 RNPS1P1-201ENST00000507437 918 ntBASIC12.3□□□□□ -0.44
LINC00477Q96M19 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PAM16-208ENST00000573553 722 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 AL356488.2-201ENST00000602755 427 ntBASIC12.3□□□□□ -0.44
LINC00477Q96M19 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 CYP51A1P2-201ENST00000419457 1499 ntBASIC12.29□□□□□ -0.44
LINC00477Q96M19 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 PMS2P4-201ENST00000412466 1052 ntBASIC12.29□□□□□ -0.44
LINC00477Q96M19 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 AL160237.2-201ENST00000556165 472 ntBASIC12.29□□□□□ -0.44
LINC00477Q96M19 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms