Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.22■□□□□ 0.19
TTC28Q96AY4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
TTC28Q96AY4 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TTC28Q96AY4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.22■□□□□ 0.19
TTC28Q96AY4 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TTC28Q96AY4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TTC28Q96AY4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 ACTBP7-201ENST00000418351 1124 ntBASIC16.22■□□□□ 0.19
TTC28Q96AY4 FAM86KP-201ENST00000509817 987 ntBASIC16.22■□□□□ 0.19
TTC28Q96AY4 AC026410.3-201ENST00000514280 936 ntBASIC16.22■□□□□ 0.19
TTC28Q96AY4 RNA5SP486-201ENST00000515961 83 ntBASIC16.22■□□□□ 0.19
TTC28Q96AY4 C2orf69P1-201ENST00000563532 1093 ntBASIC16.22■□□□□ 0.19
TTC28Q96AY4 MIR4754-201ENST00000582477 89 ntBASIC16.22■□□□□ 0.19
TTC28Q96AY4 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.22■□□□□ 0.19
TTC28Q96AY4 AC087045.2-201ENST00000606279 1003 ntBASIC16.22■□□□□ 0.19
TTC28Q96AY4 AL805961.1-203ENST00000641078 1258 ntBASIC16.22■□□□□ 0.19
TTC28Q96AY4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TTC28Q96AY4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TTC28Q96AY4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 REEP5-205ENST00000504247 480 ntTSL 5 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 AC103691.2-201ENST00000618824 433 ntBASIC16.21■□□□□ 0.19
TTC28Q96AY4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TTC28Q96AY4 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.21■□□□□ 0.19
TTC28Q96AY4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TTC28Q96AY4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TTC28Q96AY4 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.21■□□□□ 0.18
TTC28Q96AY4 AC006335.1-201ENST00000445200 547 ntBASIC16.21■□□□□ 0.18
TTC28Q96AY4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TTC28Q96AY4 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC16.21■□□□□ 0.18
TTC28Q96AY4 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TTC28Q96AY4 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.21■□□□□ 0.18
TTC28Q96AY4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.21■□□□□ 0.18
TTC28Q96AY4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.21■□□□□ 0.18
TTC28Q96AY4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
TTC28Q96AY4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TTC28Q96AY4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TTC28Q96AY4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 AC074138.1-201ENST00000611182 1303 ntBASIC16.2■□□□□ 0.18
TTC28Q96AY4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 EEF1DP4-201ENST00000446006 880 ntBASIC16.2■□□□□ 0.18
TTC28Q96AY4 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 PPY2P-201ENST00000582808 702 ntBASIC16.2■□□□□ 0.18
TTC28Q96AY4 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 SNX15-201ENST00000352068 771 ntTSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 AC007881.3-201ENST00000608897 607 ntBASIC16.2■□□□□ 0.18
TTC28Q96AY4 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TTC28Q96AY4 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TTC28Q96AY4 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.19■□□□□ 0.18
TTC28Q96AY4 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms