Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.6■□□□□ 0.57
ERCC4Q92889 AC087641.1-201ENST00000557561 1021 ntBASIC18.6■□□□□ 0.57
ERCC4Q92889 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.6■□□□□ 0.57
ERCC4Q92889 AC023824.1-201ENST00000562945 2975 ntBASIC18.6■□□□□ 0.57
ERCC4Q92889 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.6■□□□□ 0.57
ERCC4Q92889 OR7E47P-204ENST00000575924 449 ntBASIC18.6■□□□□ 0.57
ERCC4Q92889 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC4Q92889 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.6■□□□□ 0.57
ERCC4Q92889 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.6■□□□□ 0.57
ERCC4Q92889 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC4Q92889 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.6■□□□□ 0.57
ERCC4Q92889 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
ERCC4Q92889 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
ERCC4Q92889 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC4Q92889 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
ERCC4Q92889 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC18.6■□□□□ 0.57
ERCC4Q92889 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.59■□□□□ 0.57
ERCC4Q92889 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.59■□□□□ 0.57
ERCC4Q92889 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 AC112504.1-201ENST00000623415 1841 ntBASIC18.59■□□□□ 0.57
ERCC4Q92889 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
ERCC4Q92889 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.59■□□□□ 0.57
ERCC4Q92889 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.59■□□□□ 0.57
ERCC4Q92889 AC148477.8-201ENST00000624298 468 ntBASIC18.59■□□□□ 0.57
ERCC4Q92889 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.59■□□□□ 0.57
ERCC4Q92889 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.59■□□□□ 0.57
ERCC4Q92889 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.59■□□□□ 0.57
ERCC4Q92889 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ERCC4Q92889 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
ERCC4Q92889 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ERCC4Q92889 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ERCC4Q92889 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ERCC4Q92889 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ERCC4Q92889 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ERCC4Q92889 LINC01144-201ENST00000626198 1710 ntBASIC18.58■□□□□ 0.57
ERCC4Q92889 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ERCC4Q92889 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
ERCC4Q92889 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.58■□□□□ 0.56
ERCC4Q92889 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
ERCC4Q92889 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.58■□□□□ 0.56
ERCC4Q92889 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.58■□□□□ 0.56
ERCC4Q92889 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.58■□□□□ 0.56
ERCC4Q92889 EMBP1-201ENST00000458200 901 ntBASIC18.58■□□□□ 0.56
ERCC4Q92889 RNPS1P1-201ENST00000507437 918 ntBASIC18.58■□□□□ 0.56
ERCC4Q92889 AC136632.2-201ENST00000512891 861 ntBASIC18.58■□□□□ 0.56
ERCC4Q92889 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.58■□□□□ 0.56
ERCC4Q92889 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
ERCC4Q92889 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.58■□□□□ 0.56
ERCC4Q92889 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.58■□□□□ 0.56
ERCC4Q92889 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.58■□□□□ 0.56
ERCC4Q92889 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.58■□□□□ 0.56
ERCC4Q92889 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
ERCC4Q92889 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
ERCC4Q92889 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
ERCC4Q92889 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ERCC4Q92889 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ERCC4Q92889 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.57■□□□□ 0.56
ERCC4Q92889 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms