Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.34□□□□□ -0.11
TFF3Q07654 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
TFF3Q07654 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.34□□□□□ -0.11
TFF3Q07654 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.34□□□□□ -0.11
TFF3Q07654 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
TFF3Q07654 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.34□□□□□ -0.11
TFF3Q07654 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
TFF3Q07654 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
TFF3Q07654 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
TFF3Q07654 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
TFF3Q07654 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.33□□□□□ -0.11
TFF3Q07654 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
TFF3Q07654 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.33□□□□□ -0.11
TFF3Q07654 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
TFF3Q07654 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.33□□□□□ -0.12
TFF3Q07654 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 SPDYE19P-201ENST00000338590 713 ntBASIC14.33□□□□□ -0.12
TFF3Q07654 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.33□□□□□ -0.12
TFF3Q07654 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.33□□□□□ -0.12
TFF3Q07654 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TFF3Q07654 AC114501.2-201ENST00000439631 535 ntBASIC14.33□□□□□ -0.12
TFF3Q07654 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.33□□□□□ -0.12
TFF3Q07654 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
TFF3Q07654 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.33□□□□□ -0.12
TFF3Q07654 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.33□□□□□ -0.12
TFF3Q07654 AC044860.1-202ENST00000559481 777 ntBASIC14.33□□□□□ -0.12
TFF3Q07654 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.33□□□□□ -0.12
TFF3Q07654 AC132938.2-201ENST00000579188 680 ntBASIC14.33□□□□□ -0.12
TFF3Q07654 AC008494.3-201ENST00000606615 944 ntBASIC14.33□□□□□ -0.12
TFF3Q07654 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.33□□□□□ -0.12
TFF3Q07654 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.33□□□□□ -0.12
TFF3Q07654 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.33□□□□□ -0.12
TFF3Q07654 AL591163.1-201ENST00000641757 987 ntBASIC14.33□□□□□ -0.12
TFF3Q07654 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 AL118508.1-201ENST00000613502 2345 ntBASIC14.33□□□□□ -0.12
TFF3Q07654 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.33□□□□□ -0.12
TFF3Q07654 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TFF3Q07654 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 OR6D1P-203ENST00000641209 4860 ntBASIC14.33□□□□□ -0.12
TFF3Q07654 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
TFF3Q07654 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.33□□□□□ -0.12
TFF3Q07654 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TFF3Q07654 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.32□□□□□ -0.12
TFF3Q07654 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
TFF3Q07654 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
TFF3Q07654 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
TFF3Q07654 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
TFF3Q07654 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14.32□□□□□ -0.12
TFF3Q07654 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.32□□□□□ -0.12
TFF3Q07654 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.32□□□□□ -0.12
TFF3Q07654 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.32□□□□□ -0.12
TFF3Q07654 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.32□□□□□ -0.12
TFF3Q07654 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 AC106886.1-201ENST00000568660 600 ntBASIC14.32□□□□□ -0.12
TFF3Q07654 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.32□□□□□ -0.12
TFF3Q07654 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.32□□□□□ -0.12
TFF3Q07654 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.32□□□□□ -0.12
TFF3Q07654 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
TFF3Q07654 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.32□□□□□ -0.12
TFF3Q07654 AC018695.7-201ENST00000624587 2492 ntBASIC14.32□□□□□ -0.12
TFF3Q07654 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.32□□□□□ -0.12
TFF3Q07654 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TFF3Q07654 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.31□□□□□ -0.12
TFF3Q07654 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms