Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 AC098614.1-201ENST00000368528 745 ntBASIC13.32□□□□□ -0.28
LMO4P61968 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
LMO4P61968 AC004987.2-201ENST00000395959 1148 ntBASIC13.32□□□□□ -0.28
LMO4P61968 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 MEP1AP4-201ENST00000423244 1087 ntBASIC13.32□□□□□ -0.28
LMO4P61968 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.32□□□□□ -0.28
LMO4P61968 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.32□□□□□ -0.28
LMO4P61968 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.32□□□□□ -0.28
LMO4P61968 AC055876.2-201ENST00000531834 546 ntBASIC13.32□□□□□ -0.28
LMO4P61968 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13.32□□□□□ -0.28
LMO4P61968 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.32□□□□□ -0.28
LMO4P61968 TPRX2P-201ENST00000535362 881 ntBASIC13.32□□□□□ -0.28
LMO4P61968 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13.32□□□□□ -0.28
LMO4P61968 AC092337.1-201ENST00000568699 1129 ntBASIC13.32□□□□□ -0.28
LMO4P61968 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.32□□□□□ -0.28
LMO4P61968 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.32□□□□□ -0.28
LMO4P61968 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 AC074044.1-201ENST00000609673 707 ntBASIC13.32□□□□□ -0.28
LMO4P61968 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC13.32□□□□□ -0.28
LMO4P61968 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 AC022211.2-201ENST00000585075 2527 ntBASIC13.32□□□□□ -0.28
LMO4P61968 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.31□□□□□ -0.28
LMO4P61968 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
LMO4P61968 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.31□□□□□ -0.28
LMO4P61968 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 AC080080.1-201ENST00000625121 2420 ntBASIC13.31□□□□□ -0.28
LMO4P61968 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC13.31□□□□□ -0.28
LMO4P61968 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
LMO4P61968 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.31□□□□□ -0.28
LMO4P61968 AC023310.3-201ENST00000557027 670 ntBASIC13.31□□□□□ -0.28
LMO4P61968 AC100756.1-201ENST00000562736 682 ntBASIC13.31□□□□□ -0.28
LMO4P61968 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.31□□□□□ -0.28
LMO4P61968 AC138749.3-201ENST00000567691 622 ntBASIC13.31□□□□□ -0.28
LMO4P61968 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.31□□□□□ -0.28
LMO4P61968 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.31□□□□□ -0.28
LMO4P61968 AC008494.3-201ENST00000606615 944 ntBASIC13.31□□□□□ -0.28
LMO4P61968 AC116165.1-201ENST00000611806 668 ntBASIC13.31□□□□□ -0.28
LMO4P61968 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
LMO4P61968 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.31□□□□□ -0.28
LMO4P61968 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.31□□□□□ -0.28
LMO4P61968 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 AC009053.2-201ENST00000563701 2365 ntBASIC13.31□□□□□ -0.28
LMO4P61968 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 REXO1L8P-201ENST00000604378 1897 ntBASIC13.31□□□□□ -0.28
LMO4P61968 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
LMO4P61968 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
LMO4P61968 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
LMO4P61968 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LMO4P61968 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms