Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.19■□□□□ 0.34
COL4A4P53420 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 AL022328.1-201ENST00000610050 478 ntBASIC17.19■□□□□ 0.34
COL4A4P53420 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.19■□□□□ 0.34
COL4A4P53420 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A4P53420 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
COL4A4P53420 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
COL4A4P53420 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.19■□□□□ 0.34
COL4A4P53420 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL4A4P53420 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A4P53420 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 AL589702.1-201ENST00000641229 1509 ntBASIC17.18■□□□□ 0.34
COL4A4P53420 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.18■□□□□ 0.34
COL4A4P53420 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
COL4A4P53420 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
COL4A4P53420 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A4P53420 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A4P53420 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL4A4P53420 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A4P53420 AC103810.3-201ENST00000583567 96 ntBASIC17.18■□□□□ 0.34
COL4A4P53420 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.18■□□□□ 0.34
COL4A4P53420 AC244669.2-201ENST00000612320 853 ntBASIC17.18■□□□□ 0.34
COL4A4P53420 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.18■□□□□ 0.34
COL4A4P53420 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.18■□□□□ 0.34
COL4A4P53420 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A4P53420 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.18■□□□□ 0.34
COL4A4P53420 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A4P53420 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A4P53420 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.18■□□□□ 0.34
COL4A4P53420 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A4P53420 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.18■□□□□ 0.34
COL4A4P53420 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A4P53420 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL4A4P53420 FO681548.1-201ENST00000455617 1132 ntBASIC17.17■□□□□ 0.34
COL4A4P53420 AC007551.1-201ENST00000457394 519 ntBASIC17.17■□□□□ 0.34
COL4A4P53420 AC106760.1-201ENST00000508690 800 ntBASIC17.17■□□□□ 0.34
COL4A4P53420 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.17■□□□□ 0.34
COL4A4P53420 AL021578.1-201ENST00000613646 709 ntBASIC17.17■□□□□ 0.34
COL4A4P53420 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A4P53420 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.17■□□□□ 0.34
COL4A4P53420 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
COL4A4P53420 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL4A4P53420 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL4A4P53420 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A4P53420 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.17■□□□□ 0.34
COL4A4P53420 CYP4F24P-201ENST00000586049 1580 ntBASIC17.17■□□□□ 0.34
COL4A4P53420 INTS4P2-202ENST00000614726 2019 ntBASIC17.17■□□□□ 0.34
COL4A4P53420 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A4P53420 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
COL4A4P53420 PKD1P6-201ENST00000343738 4769 ntBASIC17.17■□□□□ 0.34
COL4A4P53420 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.17■□□□□ 0.34
COL4A4P53420 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A4P53420 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL4A4P53420 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.16■□□□□ 0.34
COL4A4P53420 AC092506.1-202ENST00000401022 528 ntBASIC17.16■□□□□ 0.34
COL4A4P53420 AC006033.1-201ENST00000440505 426 ntBASIC17.16■□□□□ 0.34
COL4A4P53420 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 KRT90P-201ENST00000549264 1064 ntBASIC17.16■□□□□ 0.34
COL4A4P53420 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A4P53420 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A4P53420 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.16■□□□□ 0.34
COL4A4P53420 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
COL4A4P53420 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL4A4P53420 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL4A4P53420 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL4A4P53420 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.16■□□□□ 0.34
COL4A4P53420 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A4P53420 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A4P53420 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A4P53420 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms