Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.24■□□□□ 0.35
LHX1P48742 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX1P48742 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX1P48742 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LHX1P48742 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LHX1P48742 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX1P48742 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LHX1P48742 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LHX1P48742 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.23■□□□□ 0.35
LHX1P48742 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LHX1P48742 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LHX1P48742 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LHX1P48742 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 SPDYE17-201ENST00000412399 783 ntBASIC17.23■□□□□ 0.35
LHX1P48742 RPL37AP1-201ENST00000412502 279 ntBASIC17.23■□□□□ 0.35
LHX1P48742 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.23■□□□□ 0.35
LHX1P48742 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.23■□□□□ 0.35
LHX1P48742 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LHX1P48742 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.23■□□□□ 0.35
LHX1P48742 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.23■□□□□ 0.35
LHX1P48742 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.23■□□□□ 0.35
LHX1P48742 TEX28P1-201ENST00000613479 1221 ntBASIC17.23■□□□□ 0.35
LHX1P48742 TEX28P2-201ENST00000617764 1221 ntBASIC17.23■□□□□ 0.35
LHX1P48742 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
LHX1P48742 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.23■□□□□ 0.35
LHX1P48742 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 PCDHA14-201ENST00000506751 2298 ntBASIC17.23■□□□□ 0.35
LHX1P48742 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LHX1P48742 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.23■□□□□ 0.35
LHX1P48742 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.23■□□□□ 0.35
LHX1P48742 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX1P48742 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LHX1P48742 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.22■□□□□ 0.35
LHX1P48742 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.22■□□□□ 0.35
LHX1P48742 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.22■□□□□ 0.35
LHX1P48742 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
LHX1P48742 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 FAM8A3P-201ENST00000427218 844 ntBASIC17.22■□□□□ 0.35
LHX1P48742 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.22■□□□□ 0.35
LHX1P48742 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.22■□□□□ 0.35
LHX1P48742 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.22■□□□□ 0.35
LHX1P48742 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.22■□□□□ 0.35
LHX1P48742 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.22■□□□□ 0.35
LHX1P48742 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.22■□□□□ 0.35
LHX1P48742 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.22■□□□□ 0.35
LHX1P48742 AC092364.2-202ENST00000597012 1073 ntBASIC17.22■□□□□ 0.35
LHX1P48742 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
LHX1P48742 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.22■□□□□ 0.35
LHX1P48742 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.22■□□□□ 0.35
LHX1P48742 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX1P48742 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.22■□□□□ 0.35
LHX1P48742 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.22■□□□□ 0.35
LHX1P48742 AC087499.5-201ENST00000452760 1342 ntBASIC17.21■□□□□ 0.35
LHX1P48742 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX1P48742 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.21■□□□□ 0.35
LHX1P48742 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX1P48742 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX1P48742 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX1P48742 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX1P48742 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX1P48742 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
LHX1P48742 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX1P48742 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.21■□□□□ 0.35
LHX1P48742 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX1P48742 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX1P48742 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
LHX1P48742 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms