Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.44■□□□□ 0.7
BRCA1P38398 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRCA1P38398 BNIP3P1-202ENST00000550043 1585 ntBASIC19.44■□□□□ 0.7
BRCA1P38398 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRCA1P38398 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRCA1P38398 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC19.43■□□□□ 0.7
BRCA1P38398 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC19.43■□□□□ 0.7
BRCA1P38398 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
BRCA1P38398 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.43■□□□□ 0.7
BRCA1P38398 SERPINA13P-202ENST00000478994 924 ntBASIC19.43■□□□□ 0.7
BRCA1P38398 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.43■□□□□ 0.7
BRCA1P38398 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
BRCA1P38398 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC19.43■□□□□ 0.7
BRCA1P38398 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC19.43■□□□□ 0.7
BRCA1P38398 AC006453.4-201ENST00000636949 1252 ntBASIC19.43■□□□□ 0.7
BRCA1P38398 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.43■□□□□ 0.7
BRCA1P38398 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC19.43■□□□□ 0.7
BRCA1P38398 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.43■□□□□ 0.7
BRCA1P38398 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRCA1P38398 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.43■□□□□ 0.7
BRCA1P38398 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.43■□□□□ 0.7
BRCA1P38398 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC19.43■□□□□ 0.7
BRCA1P38398 POM121L10P-201ENST00000436994 1285 ntBASIC19.43■□□□□ 0.7
BRCA1P38398 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRCA1P38398 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC19.43■□□□□ 0.7
BRCA1P38398 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
BRCA1P38398 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC19.43■□□□□ 0.7
BRCA1P38398 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRCA1P38398 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC19.43■□□□□ 0.7
BRCA1P38398 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.43■□□□□ 0.7
BRCA1P38398 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC19.43■□□□□ 0.7
BRCA1P38398 AC145423.3-201ENST00000615987 467 ntBASIC19.43■□□□□ 0.7
BRCA1P38398 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRCA1P38398 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.43■□□□□ 0.7
BRCA1P38398 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRCA1P38398 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.43■□□□□ 0.7
BRCA1P38398 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRCA1P38398 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
BRCA1P38398 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.42■□□□□ 0.7
BRCA1P38398 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 AC079178.1-201ENST00000420915 656 ntBASIC19.42■□□□□ 0.7
BRCA1P38398 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
BRCA1P38398 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.42■□□□□ 0.7
BRCA1P38398 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC19.42■□□□□ 0.7
BRCA1P38398 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC19.42■□□□□ 0.7
BRCA1P38398 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC19.42■□□□□ 0.7
BRCA1P38398 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.42■□□□□ 0.7
BRCA1P38398 AC244452.3-201ENST00000636814 210 ntBASIC19.42■□□□□ 0.7
BRCA1P38398 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
BRCA1P38398 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC19.42■□□□□ 0.7
BRCA1P38398 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRCA1P38398 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.41■□□□□ 0.7
BRCA1P38398 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
BRCA1P38398 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
BRCA1P38398 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
BRCA1P38398 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
BRCA1P38398 AL355334.1-201ENST00000417713 215 ntBASIC19.41■□□□□ 0.7
BRCA1P38398 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC19.41■□□□□ 0.7
BRCA1P38398 EEF1DP6-201ENST00000449232 372 ntBASIC19.41■□□□□ 0.7
BRCA1P38398 SPTLC1P5-201ENST00000450718 252 ntBASIC19.41■□□□□ 0.7
BRCA1P38398 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.41■□□□□ 0.7
BRCA1P38398 AP000346.4-201ENST00000614827 381 ntBASIC19.41■□□□□ 0.7
BRCA1P38398 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.41■□□□□ 0.7
BRCA1P38398 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.41■□□□□ 0.7
BRCA1P38398 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.41■□□□□ 0.7
BRCA1P38398 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.41■□□□□ 0.7
BRCA1P38398 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
BRCA1P38398 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC19.41■□□□□ 0.7
BRCA1P38398 AC022217.1-201ENST00000521069 738 ntBASIC19.41■□□□□ 0.7
BRCA1P38398 AP001582.1-201ENST00000525856 295 ntBASIC19.41■□□□□ 0.7
BRCA1P38398 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC19.41■□□□□ 0.7
BRCA1P38398 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.41■□□□□ 0.7
BRCA1P38398 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.41■□□□□ 0.7
BRCA1P38398 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.41■□□□□ 0.7
BRCA1P38398 ECM1P1-201ENST00000604092 1279 ntBASIC19.41■□□□□ 0.7
BRCA1P38398 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.41■□□□□ 0.7
BRCA1P38398 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRCA1P38398 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms