Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
PTPN6P29350 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN6P29350 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PTPN6P29350 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.53■□□□□ 0.08
PTPN6P29350 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN6P29350 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN6P29350 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
PTPN6P29350 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.53■□□□□ 0.08
PTPN6P29350 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN6P29350 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PTPN6P29350 IGLL3P-201ENST00000412472 434 ntBASIC15.53■□□□□ 0.08
PTPN6P29350 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 FAM185BP-201ENST00000443595 716 ntBASIC15.53■□□□□ 0.08
PTPN6P29350 KRT18P2-201ENST00000447938 1258 ntBASIC15.53■□□□□ 0.08
PTPN6P29350 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.53■□□□□ 0.08
PTPN6P29350 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN6P29350 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
PTPN6P29350 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.53■□□□□ 0.08
PTPN6P29350 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.53■□□□□ 0.08
PTPN6P29350 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
PTPN6P29350 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN6P29350 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.53■□□□□ 0.08
PTPN6P29350 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.53■□□□□ 0.08
PTPN6P29350 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PTPN6P29350 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PTPN6P29350 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
PTPN6P29350 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.52■□□□□ 0.08
PTPN6P29350 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.52■□□□□ 0.08
PTPN6P29350 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
PTPN6P29350 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.52■□□□□ 0.08
PTPN6P29350 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN6P29350 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.52■□□□□ 0.08
PTPN6P29350 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.52■□□□□ 0.08
PTPN6P29350 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.52■□□□□ 0.08
PTPN6P29350 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.52■□□□□ 0.08
PTPN6P29350 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
PTPN6P29350 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.52■□□□□ 0.07
PTPN6P29350 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 AC008677.1-201ENST00000519230 1561 ntBASIC15.52■□□□□ 0.07
PTPN6P29350 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
PTPN6P29350 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
PTPN6P29350 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN6P29350 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PTPN6P29350 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.51■□□□□ 0.07
PTPN6P29350 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.51■□□□□ 0.07
PTPN6P29350 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.51■□□□□ 0.07
PTPN6P29350 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN6P29350 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms