Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
UBFD1O14562 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
UBFD1O14562 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.87■□□□□ 0.13
UBFD1O14562 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.87■□□□□ 0.13
UBFD1O14562 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
UBFD1O14562 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.87■□□□□ 0.13
UBFD1O14562 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.87■□□□□ 0.13
UBFD1O14562 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.87■□□□□ 0.13
UBFD1O14562 AC098831.1-202ENST00000438821 336 ntBASIC15.87■□□□□ 0.13
UBFD1O14562 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.87■□□□□ 0.13
UBFD1O14562 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 AC104692.2-201ENST00000603054 253 ntBASIC15.87■□□□□ 0.13
UBFD1O14562 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
UBFD1O14562 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
UBFD1O14562 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
UBFD1O14562 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
UBFD1O14562 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
UBFD1O14562 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.86■□□□□ 0.13
UBFD1O14562 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.86■□□□□ 0.13
UBFD1O14562 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
UBFD1O14562 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
UBFD1O14562 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.86■□□□□ 0.13
UBFD1O14562 AL031284.1-201ENST00000419297 478 ntBASIC15.86■□□□□ 0.13
UBFD1O14562 AL450487.1-201ENST00000426799 995 ntBASIC15.86■□□□□ 0.13
UBFD1O14562 HCG4B-203ENST00000450128 991 ntBASIC15.86■□□□□ 0.13
UBFD1O14562 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.86■□□□□ 0.13
UBFD1O14562 RNA5SP419-201ENST00000515908 135 ntBASIC15.86■□□□□ 0.13
UBFD1O14562 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 UNC93B6-202ENST00000528242 690 ntBASIC15.86■□□□□ 0.13
UBFD1O14562 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.86■□□□□ 0.13
UBFD1O14562 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
UBFD1O14562 RN7SL510P-201ENST00000581311 263 ntBASIC15.86■□□□□ 0.13
UBFD1O14562 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.86■□□□□ 0.13
UBFD1O14562 AC116407.3-201ENST00000623905 1129 ntBASIC15.86■□□□□ 0.13
UBFD1O14562 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.86■□□□□ 0.13
UBFD1O14562 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
UBFD1O14562 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
UBFD1O14562 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
UBFD1O14562 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.86■□□□□ 0.13
UBFD1O14562 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.85■□□□□ 0.13
UBFD1O14562 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.85■□□□□ 0.13
UBFD1O14562 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.85■□□□□ 0.13
UBFD1O14562 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.85■□□□□ 0.13
UBFD1O14562 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
UBFD1O14562 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.85■□□□□ 0.13
UBFD1O14562 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
UBFD1O14562 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.85■□□□□ 0.13
UBFD1O14562 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.85■□□□□ 0.13
UBFD1O14562 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms