Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 AC106730.1-201ENST00000566722 1090 ntBASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 WASH6P-202ENST00000359512 1437 ntBASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS9D1Q9Y2B5 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 RN7SL371P-201ENST00000578099 267 ntBASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 AC092919.2-201ENST00000623631 1645 ntBASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS9D1Q9Y2B5 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 AC022188.1-201ENST00000620960 1664 ntBASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 KRT18P2-201ENST00000447938 1258 ntBASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 AC093724.1-201ENST00000448659 1027 ntBASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 KRT18P3-201ENST00000451602 1288 ntBASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 AL365330.1-201ENST00000607459 531 ntBASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms