Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.77■□□□□ 0.27
TRIM56Q9BRZ2 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM56Q9BRZ2 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM56Q9BRZ2 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
TRIM56Q9BRZ2 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.77■□□□□ 0.27
TRIM56Q9BRZ2 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 KRT18P67-201ENST00000432816 1264 ntBASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 MIR7706-201ENST00000613747 67 ntBASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 FAM215A-202ENST00000632077 792 ntBASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM56Q9BRZ2 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 AC105917.1-201ENST00000506637 2539 ntBASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 AC103702.1-201ENST00000548801 2630 ntBASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 AC087641.1-201ENST00000557561 1021 ntBASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 ACTL9-202ENST00000612068 1252 ntBASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 GGTLC5P-201ENST00000617623 998 ntBASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM56Q9BRZ2 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 AP002469.2-201ENST00000531724 424 ntBASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
TRIM56Q9BRZ2 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms