Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 AL121912.1-201ENST00000603683 238 ntBASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
ZNF540Q8NDQ6 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 GGT3P-204ENST00000453783 1664 ntBASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 AL353593.2-201ENST00000602529 1483 ntBASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.25■□□□□ 0.03
ZNF540Q8NDQ6 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 SAPCD2P3-201ENST00000455031 850 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms