Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
USP39Q53GS9 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
USP39Q53GS9 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.62■□□□□ 0.25
USP39Q53GS9 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.62■□□□□ 0.25
USP39Q53GS9 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.62■□□□□ 0.25
USP39Q53GS9 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.62■□□□□ 0.25
USP39Q53GS9 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.62■□□□□ 0.25
USP39Q53GS9 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.62■□□□□ 0.25
USP39Q53GS9 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
USP39Q53GS9 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.62■□□□□ 0.25
USP39Q53GS9 AC087499.5-201ENST00000452760 1342 ntBASIC16.62■□□□□ 0.25
USP39Q53GS9 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
USP39Q53GS9 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.62■□□□□ 0.25
USP39Q53GS9 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP39Q53GS9 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
USP39Q53GS9 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.62■□□□□ 0.25
USP39Q53GS9 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
USP39Q53GS9 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
USP39Q53GS9 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
USP39Q53GS9 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
USP39Q53GS9 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 LINC00895-201ENST00000629028 1637 ntBASIC16.61■□□□□ 0.25
USP39Q53GS9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.61■□□□□ 0.25
USP39Q53GS9 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.61■□□□□ 0.25
USP39Q53GS9 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 AL353779.1-201ENST00000434793 351 ntBASIC16.61■□□□□ 0.25
USP39Q53GS9 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 MTND6P24-201ENST00000440466 518 ntBASIC16.61■□□□□ 0.25
USP39Q53GS9 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
USP39Q53GS9 AC009477.1-201ENST00000452936 217 ntBASIC16.61■□□□□ 0.25
USP39Q53GS9 TP53TG3HP-202ENST00000569755 579 ntBASIC16.61■□□□□ 0.25
USP39Q53GS9 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.61■□□□□ 0.25
USP39Q53GS9 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.61■□□□□ 0.25
USP39Q53GS9 AL589739.1-201ENST00000607720 493 ntBASIC16.61■□□□□ 0.25
USP39Q53GS9 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.61■□□□□ 0.25
USP39Q53GS9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.61■□□□□ 0.25
USP39Q53GS9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
USP39Q53GS9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.61■□□□□ 0.25
USP39Q53GS9 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
USP39Q53GS9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.61■□□□□ 0.25
USP39Q53GS9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP39Q53GS9 AC007541.1-201ENST00000570282 1469 ntBASIC16.61■□□□□ 0.25
USP39Q53GS9 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP39Q53GS9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms