Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.32■□□□□ 0.36
LIG3P49916 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.31■□□□□ 0.36
LIG3P49916 AC073347.1-201ENST00000421633 2643 ntBASIC17.31■□□□□ 0.36
LIG3P49916 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.31■□□□□ 0.36
LIG3P49916 MIR574-201ENST00000385209 96 ntBASIC17.31■□□□□ 0.36
LIG3P49916 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LIG3P49916 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 AC145285.3-201ENST00000564603 959 ntBASIC17.31■□□□□ 0.36
LIG3P49916 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 Z83851.2-201ENST00000609564 659 ntBASIC17.31■□□□□ 0.36
LIG3P49916 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.31■□□□□ 0.36
LIG3P49916 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.31■□□□□ 0.36
LIG3P49916 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
LIG3P49916 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIG3P49916 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.3■□□□□ 0.36
LIG3P49916 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LIG3P49916 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LIG3P49916 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 FAM45BP-202ENST00000592932 1624 ntBASIC17.3■□□□□ 0.36
LIG3P49916 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
LIG3P49916 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 ACTG1P4-201ENST00000425123 1122 ntBASIC17.3■□□□□ 0.36
LIG3P49916 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.3■□□□□ 0.36
LIG3P49916 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 AL671883.3-201ENST00000603274 991 ntBASIC17.3■□□□□ 0.36
LIG3P49916 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIG3P49916 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LIG3P49916 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LIG3P49916 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.3■□□□□ 0.36
LIG3P49916 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 AC016396.2-201ENST00000562575 1417 ntBASIC17.3■□□□□ 0.36
LIG3P49916 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIG3P49916 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.29■□□□□ 0.36
LIG3P49916 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.29■□□□□ 0.36
LIG3P49916 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIG3P49916 PMS2P1-201ENST00000431037 1228 ntBASIC17.29■□□□□ 0.36
LIG3P49916 AC009947.1-201ENST00000444350 727 ntBASIC17.29■□□□□ 0.36
LIG3P49916 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.29■□□□□ 0.36
LIG3P49916 AC034105.1-201ENST00000563488 319 ntBASIC17.29■□□□□ 0.36
LIG3P49916 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms